1099-R state tax not report but was paid seperately

Did you file the state return?  And it's missing the 1099R income?  Most states start with the federal AGI which would include the 1099R.  Do you just need to enter the extra estimated payment you sent in?  If you filed the state should catch that and add it in for you.  Otherwise you need to enter it.  Hopefully you paid it with a state estimated payment slip not a tax due voucher.  

To enter Federal or State Estimated Taxes Paid, including a state estimated payment made in January for the prior year, go to

Federal on left or at top (Personal for Home & Business)

Deductions and Credits

Then scroll way down to Estimates and Other Taxes Paid

Estimated - click the Start or Update button

You enter state estimated payments under the federal side (because they can be a federal itemized Deduction). THEN after you finish filling out the estimates under Federal you need to click on the State Tab at the top and start the state return over for it to update.

You have to pick the right state from the drop down box and enter the right payment dates.