You are correct in wanting to avoid claiming the same expense twice. But the more accurate approach is to record the payment as a rent expense, and not a guaranteed payment. The IRS explains:
For certain transactions between a partner and his or her partnership, the partner is treated as not being a member of the partnership. These transactions include the following
Performing services for, or transferring property to, a partnership if:
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There is a related allocation and distribution to a partner; and
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The entire transaction, when viewed together, is properly characterized as occurring between the partnership and a partner not acting in the capacity of a partner.
Guaranteed payments are typically for services or capital related to the partnership business. Put another way, if it's an expense you have just as easily incurred with a third party, it's more like an expense and less like a guaranteed payment.
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