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They just replied to me "Even if you qualify for the exemption, we would still code it at a 1. Then at tax time you would work with a tax advisor who can show that you are exempt from that penalty."
My 'tax advisor' is usually TurboTax. Hopefully TurboTax lets me show that I am exempt from the penalty.
On the page were TurboTax allows you to make entries to potentially reduce the penalty there is a box for you to enter the amount that you deem to be eligible for this exception. With that entry having been made, TurboTax will populate line 2 of Form 5329 with that amount and code 01.
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