Can you confirm if the extension filing can be rejected in the event that a payment has been completed on the IRS DirectPay site for the extension, prior to filing the extension form through TurboTax?
If you made a payment, an extension is automatic issued when you made that payment. If you tried to file an amendment after making the payment, it would be rejected because one went on file when you made your payment.
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If your return is rejected with IRS rejection code R0000-902-01, the Taxpayer Identification Number (TIN) for the primary taxpayer has already been used on a return filed with the IRS. In most cases, the taxpayer's social security number (SSN) was entered incorrectly.
Is your Social Security correct on your tax return?
Do you know if someone else may have entered you on their tax return as a dependent?